Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs3785277 chr16:89839142 G/C 0.000168 177 25.87 20.2 36.37 KM Plot
PCPG rs3785279 chr16:89824562 G/C 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs3785281 chr16:89824263 G/C 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs3792269 chr2:241531479 A/G 3.44E-5 178 25.92 20.2 10.3 KM Plot
PCPG rs3792273 chr2:241533030 C/T 0.000344 178 18.78 20.2 25.87 KM Plot
PCPG rs3792275 chr2:241536692 G/A 3.44E-5 178 25.92 20.2 10.3 KM Plot
PCPG rs3793218 chr7:158852659 T/C 0.000211 173 25.4 23.35 41.87 KM Plot
PCPG rs3793778 chr10:1079372 A/G 1.28E-5 175 24.62 29.57 13.38 KM Plot
PCPG rs3803676 chr16:89596106 C/T 0.000306 178 27.6 25.4 19.53 KM Plot
PCPG rs3803679 chr16:89590667 T/C 8.51E-5 173 27.6 25.67 18.2 KM Plot
PCPG rs3803680 chr16:89590243 G/A 0.000192 177 26.78 25.4 19.53 KM Plot
PCPG rs3806202 chr1:40505872 C/T 2.96E-6 173 25 22.3 37.18 KM Plot
PCPG rs3809641 chr16:89574166 C/G 0.000256 175 26.78 25.28 19.2 KM Plot
PCPG rs3816155 chr2:136552526 A/C 3.02E-5 175 9.72 23.77 25.67 KM Plot
PCPG rs3817040 chr3:122254769 G/A 1.01E-10 173 25.4 25.92 5.8 KM Plot